This was a feature that was very easy to do on my current Android tablet.
So when I purchased my iPad, I was a bit disappointed I could not accomplish this.
I searched quite a few apps, and came across an app that's turning out to be one of my favorite apps.
It's called iFiles. It allows me to upload and download multiple files to and from my cloud storage. The app also has it's own built in file structure, so I'm able to create folders and sub-folders. What I like most about the app is that it can download files from my Dropbox account, and allow me to place them in whatever folder I like within the folder structure of the app. I can also copy entire folders. I can select the folders I want to copy from my Dropbox account, and select where to paste them on my iPad. All files within those folders are copied as well.
I cam across similar apps, but this one seems to be my favorite so far.
I now feel better about my iPad purchase. If it wasn't for this app, I probably would have returned my iPad for a new Android tablet.
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